Uncovering Dynamical Equations of Stochastic Decision Models Using Data-Driven SINDy Algorithm

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Abstract

Decision formation in perceptual decision making involves sensory evidence accumulation instantiated by the temporal integration of an internal decision variable toward some decision criterion or threshold, as described by sequential sampling theoretical models. The decision variable can be represented in the form of experimentally observable neural activities. Hence, elucidating the appropriate theoretical model becomes crucial to understanding the mechanisms underlying perceptual decision formation. Existing computational methods are limited to either fitting of choice behavioral data or linear model estimation from neural activity data. In this work, we made use of sparse identification of nonlinear dynamics (SINDy), a data-driven approach, to elucidate the deterministic linear and nonlinear components of often-used stochastic decision models within reaction time task paradigms. Based on the simulated decision variable activities of the models and assuming the noise coefficient term is known beforehand, SINDy, enhanced with approaches using multiple trials, could readily estimate the deterministic terms in the dynamical equations, choice accuracy, and decision time of the models across a range of signal-to-noise ratio values. In particular, SINDy performed the best using the more memory-intensive multitrial approach while trial averaging of parameters performed more moderately. The single-trial approach, although expectedly not performing as well, may be useful for real-time modeling. Taken together, our work offers alternative approaches for SINDy to uncover the dynamics in perceptual decision making and, more generally, for first-passage time problems.
Original languageEnglish
Pages (from-to)569-587
Number of pages19
JournalNeural Computation
Volume37
Issue number3
Early online date9 Jan 2025
DOIs
Publication statusPublished (in print/issue) - 31 Mar 2025

Bibliographical note

© 2025 Massachusetts Institute of Technology. Published under a Creative Commons Attribution 4.0 International (CC BY 4.0) license.

Data Availability Statement

Source codes are available at https://github.com/Lenfesty-b/SINDy

Funding

K.W.-L. was supported by HSC R&D (STL/5540/19) and MRC (MC_OC_20020). We are grateful for access to the Tier 2 High Performance Computing resources provided by the Northern Ireland High Performance Computing (NI-HPC) facility funded by the UK Engineering and Physical Sciences Research Council (EPSRC), Grant No. EP/T022175/1.

Funder number
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    UN SDGs

    This output contributes to the following UN Sustainable Development Goals (SDGs)

    1. SDG 3 - Good Health and Well-being
      SDG 3 Good Health and Well-being
    2. SDG 9 - Industry, Innovation, and Infrastructure
      SDG 9 Industry, Innovation, and Infrastructure

    Keywords

    • decision making
    • machine learning
    • sparse regression
    • SINDy
    • cognitive computational modelling
    • drift diffusion model
    • nonlinear dynamical model
    • first passage time

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