Sendotypes predict worsening renal function in chronic kidney disease patients

Thomas McLarnon, Steven Watterson, Sean McCallion, Eamonn Cooper, Andrew R. English, Ying Kuan, David S. Gibson, Elaine K. Murray, Frank McCarroll, Shu‐Dong Zhang, Anthony J. Bjourson, Taranjit Singh Rai

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Abstract

Background: Senescence associated secretory phenotype (SASP) contributes to age‐related pathology, however the role of SASP in Chronic Kidney Disease (CKD) is unclear. Here, we employ a variety of omic techniques to show that senescence signatures can separate CKD patients into distinct senescence endotypes (Sendotype). Methods: Using specific numbers of senescent proteins, we clustered CKD patients into two distinct sendotypes based on proteomic expression. These clusters were evaluated with three independent criteria assessing inter and intra cluster distances. Differential expression analysis was then performed to investigate differing proteomic expression between sendotypes. Results: These clusters accurately stratified CKD patients, with patients in each sendotype having different clinical profiles. Higher expression of these proteins correlated with worsened disease symptomologies. Biological signalling pathways such as TNF, Janus kinase‐signal transducers and activators of transcription (JAK‐STAT) and NFKB were differentially enriched between patient sendotypes, suggesting potential mechanisms driving the endotype of CKD. Conclusion: Our work reveals that, combining clinical features with SASP signatures from CKD patients may help predict whether a patient will have worsening or stable renal trajectory. This has implications for the CKD clinical care pathway and will help clinicians stratify CKD patients accurately. Key points: Senescent proteins are upregulated in severe patients compared to mild patients Senescent proteins can stratify patients based on disease severity High expression of senescent proteins correlates with worsening renal trajectories
Original languageEnglish
Pages (from-to)1-17
Number of pages17
JournalClinical and translational medicine
Volume15
Issue number4
Early online date27 Mar 2025
DOIs
Publication statusPublished online - 27 Mar 2025

Bibliographical note

© 2025 The Author(s). Clinical and Translational Medicine published by John Wiley & Sons Australia, Ltd on behalf of Shanghai Institute of Clinical Bioinformatics.

Data Access Statement

The raw data supporting the conclusions of this article will be made available by the authors upon request.

Keywords

  • machine learning
  • sendotype
  • senescence
  • biomarker
  • CKD
  • Humans
  • Middle Aged
  • Renal Insufficiency, Chronic/metabolism
  • Male
  • Proteomics/methods
  • Female
  • Adult
  • Aged
  • Biomarker
  • Renal Insufficiency, Chronic
  • Senescence
  • Sendotype
  • Machine Learning
  • Proteomics
  • Ckd
  • Renal Insufficiency, Chronic - metabolism - physiopathology
  • Proteomics - methods

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