Quantitative antisense screening and optimization for exon 51 skipping in Duchenne muscular dystrophy

Yusuke Echigoya, Kenji Rowel Q. Lim, Nhu Trieu, Bo Bao, Bailey Miskew-Nichols, Maria Candida Vila, James S. Novak, Yuko Hara, Joshua Lee, Aleksander Touznik, Kamel Mamchaoui, Yoshitsugu Aoki, Shin'ichi Takeda, Kanneboyina Nagaraju, Vincent Mouly, Rika Maruyama, William Duddy, Toshifumi Yokota

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Abstract

Duchenne muscular dystrophy (DMD), the most common lethal genetic disorder, is caused by mutations in the dystrophin (DMD) gene. Exon skipping is a therapeutic approach that uses antisense oligonucleotides (AOs) to modulate splicing and restore the reading frame, leading to truncated, yet functional protein expression. In 2016, the US Food and Drug Administration (FDA) conditionally approved the first phosphorodiamidate morpholino oligomer (morpholino)-based AO drug, eteplirsen, developed for DMD exon 51 skipping. Eteplirsen remains controversial with insufficient evidence of its therapeutic effect in patients. We recently developed an in silico tool to design antisense morpholino sequences for exon skipping. Here, we designed morpholino AOs targeting DMD exon 51 using the in silico tool and quantitatively evaluated the effects in immortalized DMD muscle cells in vitro. To our surprise, most of the newly designed morpholinos induced exon 51 skipping more efficiently compared with the eteplirsen sequence. The efficacy of exon 51 skipping and rescue of dystrophin protein expression were increased by up to more than 12-fold and 7-fold, respectively, compared with the eteplirsen sequence. Significant in vivo efficacy of the most effective morpholino, determined in vitro, was confirmed in mice carrying the human DMD gene. These findings underscore the importance of AO sequence optimization for exon skipping.
Original languageEnglish
Pages (from-to)2561-2572
Number of pages12
JournalMolecular Therapy
Volume25
Issue number11
Early online date28 Jul 2017
DOIs
Publication statusPublished - 1 Nov 2017

Keywords

  • exon skipping
  • duchenne
  • muscular dystrophy
  • computational biology

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    Echigoya, Y., Lim, K. R. Q., Trieu, N., Bao, B., Miskew-Nichols, B., Vila, M. C., Novak, J. S., Hara, Y., Lee, J., Touznik, A., Mamchaoui, K., Aoki, Y., Takeda, S., Nagaraju, K., Mouly, V., Maruyama, R., Duddy, W., & Yokota, T. (2017). Quantitative antisense screening and optimization for exon 51 skipping in Duchenne muscular dystrophy. Molecular Therapy, 25(11), 2561-2572. https://doi.org/10.1016/j.ymthe.2017.07.014