FPGA-Based Acceleration of Protein Docking

B Sharat Chandra Varma, Kolin Paul, M Balakrishnan

Research output: Chapter in Book/Report/Conference proceedingChapter

Abstract

In this chapter, we discuss FPGA-based acceleration of a commonly used protein docking application. The docking application is compute intensive and involves floating-point computations. We used the methodology discussed in Chap. 3 to accelerate the application. Accordingly, we explain the identification of kernel from the software implementation and their FPGA implementation to get performance benefits.
LanguageEnglish
Title of host publicationArchitecture Exploration of FPGA Based Accelerators for BioInformatics Applications
Pages39-54
Number of pages16
DOIs
Publication statusPublished - 3 Mar 2016

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Varma, B. S. C., Paul, K., & Balakrishnan, M. (2016). FPGA-Based Acceleration of Protein Docking. In Architecture Exploration of FPGA Based Accelerators for BioInformatics Applications (pp. 39-54) https://doi.org/10.1007/978-981-10-0591-6_4
Varma, B Sharat Chandra ; Paul, Kolin ; Balakrishnan, M. / FPGA-Based Acceleration of Protein Docking. Architecture Exploration of FPGA Based Accelerators for BioInformatics Applications. 2016. pp. 39-54
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Varma, BSC, Paul, K & Balakrishnan, M 2016, FPGA-Based Acceleration of Protein Docking. in Architecture Exploration of FPGA Based Accelerators for BioInformatics Applications. pp. 39-54. https://doi.org/10.1007/978-981-10-0591-6_4

FPGA-Based Acceleration of Protein Docking. / Varma, B Sharat Chandra; Paul, Kolin; Balakrishnan, M.

Architecture Exploration of FPGA Based Accelerators for BioInformatics Applications. 2016. p. 39-54.

Research output: Chapter in Book/Report/Conference proceedingChapter

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Varma BSC, Paul K, Balakrishnan M. FPGA-Based Acceleration of Protein Docking. In Architecture Exploration of FPGA Based Accelerators for BioInformatics Applications. 2016. p. 39-54 https://doi.org/10.1007/978-981-10-0591-6_4