Photo of Priyank Shukla
  • Northlands Road, Magee Campus

    BT48 7JL Londonderry

    United Kingdom

  • 124 Citations
  • 5 h-Index
20102020

Research output per year

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Personal profile

Biography

Dr Priyank Shukla was appointed to his current post as a Lecturer in Stratified Medicine (Bioinformatics) at Ulster University in July 2016 and is a member of the Northern Ireland Centre for Stratified Medicine research group.

Dr Shukla earned his BSc in Biotechnology (2001-2004) from Bareilly College (MJPR University, Bareilly, India) and MSc in Bioinformatics (2004-2006) from University Institute of Engineering & Technology (CSJM University, Kanpur, India). He then joined Laboratory of Genomics at Department of Histology Embryology and Applied Biology, University of Bologna for three months as a Visiting Researcher to co-work on a bioinformatics project aimed to full parsing of Genbank database.

He completed a PhD in Computer Science (area of research: Machine Learning and Bioinformatics) at Bologna Biocomputing Group under the supervision of Professor Rita Casadio, where he developed Machine Learning based methods for prediction of disulphide bonding states of cysteine residues in proteins.

Dr Shukla undertook a Postdoctoral Scientist (Bioinformatics) position at Department of Biomedical Sciences, University of Veterinary Medicine, Vienna, Austria (2010-2016), where he was responsible for consulting, data analysis and data management of Next Generation Sequencing (NGS) based projects of Jak-Stat Signalling Consortium. His research focused on applying NGS approaches to understand Epithelial to Mesenchymal Transition (EMT) and Jak-Stat Signalling – linking infection, inflammation and cancer.

Research Interests

Dr Shukla aims in developing Machine Learning – specifically Artificial Neural Networks (ANN), Hidden Markov Models (HMM) and Support Vector Machines (SVM) based computational methods for insilico biomarker discovery and patients’ stratification in inflammatory diseases and cancer via exploiting high-throughput omics data (genomics, transcriptomics, proteomics & metabolomics).

Teaching Interests

Undergraduate Teaching

  • BIO337: Mathematical and Computational Methods – 2
  • BIO535: Insilico Genomics Proteomics & Metabolomics Analysis Methods
  • BIO540: Clinical Research Project
  • BIO541: Biomedical Informatics (Module Coordinator)

Postgraduate Teaching

  • BIO831: Biomedical Informatics (Module Coordinator)
  • BIO833: Research Project

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Research Output

Clinical and laboratory associations with methotrexate metabolism gene polymorphisms in rheumatoid arthritis

D'Cruz, L., McEleney, K., Tan, B. C., Shukla, P., Gardiner, P., Connolly, P., Conway, C., Cobice, D. & Gibson, D., 24 Sep 2020, (Accepted/In press) In : Journal of Personalized Medicine.

Research output: Contribution to journalArticle

  • 1 Downloads (Pure)

    Improving computational skills of personalised Medicine students through positive pedagogy

    Shukla, P., 20 Feb 2020, Improving computational skills of personalised Medicine students through positive pedagogy.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    Open Access
  • Open Access
  • Comparative proteomics analyses in light-chain cardiac amyloidosis and acute coronary syndrome

    Harrigan, R., El Chemaly, M., Shukla, P., Egan, P., Drain, S., Elder, P., McGilligan, V. E., Peace, A., Bjourson, AJ. & Alexander, H. D., 11 Sep 2019.

    Research output: Contribution to conferencePoster

    Emergence of three dimensional printed cardiac tissue: Opportunities and challenges in cardiovascular diseases.

    Charbe, N., Zacconi, F., Amnerkar, N., Pardhi, D., Shukla, P., Mukattash, T., McCarron, P. A. & Tambuwala, M. M., 12 Jan 2019, In : Current Cardiology Reviews. 15, 3, p. 188-204 17 p.

    Research output: Contribution to journalReview article

    Open Access
    File
  • 2 Citations (Scopus)
    8 Downloads (Pure)

    Activities

    • 5 Invited talk

    Machine Learning in Life and Health Sciences: a biologist-turned-informatician’s perspective.

    Priyank Shukla (Invited speaker)

    7 Mar 2019

    Activity: Talk or presentationInvited talk

    ChIP-Seq of NFkB & IFNß Pathways

    Priyank Shukla (Speaker)

    11 Oct 2012

    Activity: Talk or presentationInvited talk

    Protein Folding Problem

    Priyank Shukla (Speaker)

    10 Dec 2007

    Activity: Talk or presentationInvited talk

    Algorithm development for Protein Contact Map prediction

    Priyank Shukla (Speaker)

    17 Dec 2007

    Activity: Talk or presentationInvited talk